SNP Report
Basic Infomation
| Name | rs11832727 dbSNP |
|---|---|
| Location | chr:12,49999275 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11830472 | 1.00[GIH][hapmap];1.00[YRI][hapmap] |
| rs11831673 | 1.00[YRI][hapmap] |
| rs11831877 | 0.94[AFR][1000 genomes] |
| rs11832420 | 1.00[YRI][hapmap] |
| rs11835085 | 1.00[YRI][hapmap] |
| rs11837399 | 1.00[AFR][1000 genomes] |
| rs11837408 | 1.00[AFR][1000 genomes] |
| rs11837637 | 1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
| rs3861577 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs57489906 | 0.81[AFR][1000 genomes] |
| rs58072420 | 0.94[AFR][1000 genomes] |
| rs59576871 | 0.91[AFR][1000 genomes] |
| rs59597892 | 1.00[AFR][1000 genomes] |
| rs59957222 | 0.86[AFR][1000 genomes] |
| rs60117004 | 0.94[AFR][1000 genomes] |
| rs7131756 | 0.94[AFR][1000 genomes] |
| rs7134329 | 1.00[AFR][1000 genomes] |
| rs7307183 | 1.00[AFR][1000 genomes] |
| rs7310069 | 0.81[AFR][1000 genomes] |
| rs7312037 | 0.94[AFR][1000 genomes] |
| rs7313183 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs7313590 | 0.94[AFR][1000 genomes] |
| rs7960185 | 1.00[YRI][hapmap] |
| rs7978381 | 1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM186B | Proximal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| FAM186B | Distal transcriptional regulation |
| PRPF40B | RNA binding protein mediated regulation |
| FAM186B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014