SNP Report
Basic Infomation
| Name | rs59576871 dbSNP |
|---|---|
| Location | chr:12,50034992 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11169071 | 1.00[EUR][1000 genomes] |
| rs11830472 | 0.83[AFR][1000 genomes] |
| rs11831670 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11831673 | 0.83[AFR][1000 genomes] |
| rs11831877 | 0.86[AFR][1000 genomes] |
| rs11832727 | 0.91[AFR][1000 genomes] |
| rs11835085 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11837399 | 0.91[AFR][1000 genomes] |
| rs11837408 | 0.91[AFR][1000 genomes] |
| rs11837637 | 0.94[AFR][1000 genomes] |
| rs12298123 | 1.00[EUR][1000 genomes] |
| rs12300085 | 1.00[EUR][1000 genomes] |
| rs12306942 | 1.00[EUR][1000 genomes] |
| rs12309399 | 1.00[EUR][1000 genomes] |
| rs12311319 | 1.00[EUR][1000 genomes] |
| rs12311910 | 1.00[EUR][1000 genomes] |
| rs12313583 | 1.00[EUR][1000 genomes] |
| rs12314348 | 1.00[EUR][1000 genomes] |
| rs12315746 | 1.00[EUR][1000 genomes] |
| rs12315941 | 1.00[EUR][1000 genomes] |
| rs12320104 | 1.00[EUR][1000 genomes] |
| rs12320612 | 1.00[EUR][1000 genomes] |
| rs12321717 | 1.00[EUR][1000 genomes] |
| rs28420769 | 1.00[EUR][1000 genomes] |
| rs57970210 | 1.00[EUR][1000 genomes] |
| rs58072420 | 0.97[AFR][1000 genomes] |
| rs58867453 | 1.00[EUR][1000 genomes] |
| rs59570650 | 1.00[EUR][1000 genomes] |
| rs59597892 | 0.91[AFR][1000 genomes] |
| rs60117004 | 0.86[AFR][1000 genomes] |
| rs60507124 | 1.00[EUR][1000 genomes] |
| rs61227990 | 1.00[EUR][1000 genomes] |
| rs61234946 | 1.00[EUR][1000 genomes] |
| rs7131756 | 0.86[AFR][1000 genomes] |
| rs7134329 | 0.91[AFR][1000 genomes] |
| rs7307183 | 0.91[AFR][1000 genomes] |
| rs7312037 | 0.86[AFR][1000 genomes] |
| rs7313183 | 0.86[AFR][1000 genomes] |
| rs7313590 | 0.86[AFR][1000 genomes] |
| rs7960185 | 1.00[EUR][1000 genomes] |
| rs7978381 | 0.83[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Proximal transcriptional regulation |
| FMNL3 | Proximal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| FMNL3 | Distal transcriptional regulation |
| ENSG00000257570 | Distal transcriptional regulation |
| BCDIN3D | Distal transcriptional regulation |
| PRPF40B | RNA binding protein mediated regulation |
| FMNL3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014