SNP Report
Basic Infomation
| Name | rs12320104 dbSNP |
|---|---|
| Location | chr:12,49920395 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11169055 | 1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11169071 | 1.00[EUR][1000 genomes] |
| rs11830622 | 1.00[AMR][1000 genomes] |
| rs11831670 | 1.00[EUR][1000 genomes] |
| rs11834883 | 1.00[AMR][1000 genomes] |
| rs11835085 | 1.00[EUR][1000 genomes] |
| rs11836969 | 1.00[AMR][1000 genomes] |
| rs12296998 | 1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12298123 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12298506 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12300085 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12306942 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12309399 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12310046 | 1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12311319 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12311910 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12313583 | 1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12314348 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12315746 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12315941 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12318913 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12320434 | 1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12320612 | 0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12321717 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13377828 | 1.00[AMR][1000 genomes] |
| rs28420769 | 1.00[EUR][1000 genomes] |
| rs57970210 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58867453 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59250711 | 1.00[AMR][1000 genomes] |
| rs59570650 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59576871 | 1.00[EUR][1000 genomes] |
| rs60254449 | 1.00[AMR][1000 genomes] |
| rs60507124 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60658484 | 1.00[AMR][1000 genomes] |
| rs61227990 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61234946 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7960185 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPATS2 | Proximal transcriptional regulation |
| DNAJC22 | Distal transcriptional regulation |
| SPATS2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014