SNP Report
Basic Infomation
| Name | rs59957222 dbSNP |
|---|---|
| Location | chr:12,49974494 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11831877 | 0.91[AFR][1000 genomes] |
| rs11832727 | 0.86[AFR][1000 genomes] |
| rs11837399 | 0.86[AFR][1000 genomes] |
| rs11837408 | 0.86[AFR][1000 genomes] |
| rs11837637 | 0.83[AFR][1000 genomes] |
| rs58072420 | 0.80[AFR][1000 genomes] |
| rs59597892 | 0.86[AFR][1000 genomes] |
| rs60117004 | 0.91[AFR][1000 genomes] |
| rs7131756 | 0.91[AFR][1000 genomes] |
| rs7134329 | 0.86[AFR][1000 genomes] |
| rs7307183 | 0.86[AFR][1000 genomes] |
| rs7312037 | 0.91[AFR][1000 genomes] |
| rs7313183 | 0.91[AFR][1000 genomes] |
| rs7313590 | 0.91[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRPF40B | Proximal transcriptional regulation |
| ENSG00000257964 | Proximal transcriptional regulation |
| SPATS2 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| DNAJC22 | Distal transcriptional regulation |
| ENSG00000257964 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014