SNP Report

Basic Infomation

Name	rs11175780 dbSNP
Location	chr:12,40659096
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506152	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11175139	0.81[YRI][hapmap]
rs11175629	0.81[YRI][hapmap]
rs11175663	0.81[YRI][hapmap]
rs11175766	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11564129	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11564149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs11564150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11564180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12300008	0.81[YRI][hapmap]
rs12314745	0.81[YRI][hapmap]
rs1388599	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs17444089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs17466080	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17466178	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs17466185	0.96[EUR][1000 genomes]
rs17466486	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17466521	1.00[JPT][hapmap]
rs17466626	1.00[CHB][hapmap]
rs17519881	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2046928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2404834	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs41286474	0.92[EUR][1000 genomes]
rs4423250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs7132073	0.92[EUR][1000 genomes]
rs7132755	0.81[YRI][hapmap]
rs7135747	0.90[YRI][hapmap]
rs73102746	0.96[EUR][1000 genomes]
rs7971935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)