SNP Report
Basic Infomation
| Name | rs17466185 dbSNP |
|---|---|
| Location | chr:12,40684622 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506152 | 0.88[EUR][1000 genomes] |
| rs11175766 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11175780 | 0.96[EUR][1000 genomes] |
| rs11564129 | 0.94[EUR][1000 genomes] |
| rs11564149 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11564150 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564180 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1388599 | 0.84[ASN][1000 genomes] |
| rs17444089 | 0.92[EUR][1000 genomes] |
| rs17466178 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17466486 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17519881 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2046928 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs41286474 | 0.92[EUR][1000 genomes] |
| rs4423250 | 0.92[EUR][1000 genomes] |
| rs7132073 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73102746 | 0.96[EUR][1000 genomes] |
| rs7971935 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014