SNP Report
Basic Infomation
| Name | rs17444089 dbSNP |
|---|---|
| Location | chr:12,40719806 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506152 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11175766 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs11175780 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes] |
| rs11564129 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs11564149 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564150 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes] |
| rs11564180 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1388599 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs17466080 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs17466178 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes] |
| rs17466185 | 0.92[EUR][1000 genomes] |
| rs17466486 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17466521 | 0.93[ASN][1000 genomes] |
| rs17466626 | 1.00[CHB][hapmap] |
| rs17519881 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs2046928 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes] |
| rs2404834 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs41286474 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4423250 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7132073 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73102746 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7971935 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014