SNP Report
Basic Infomation
| Name | rs11564129 dbSNP |
|---|---|
| Location | chr:12,40669939 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506152 | 0.85[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs11175766 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11175780 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11564149 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs11564150 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11564180 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs1388599 | 0.85[CEU][hapmap];0.84[AMR][1000 genomes] |
| rs17444089 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs17466080 | 0.85[CEU][hapmap] |
| rs17466178 | 0.85[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs17466185 | 0.94[EUR][1000 genomes] |
| rs17466486 | 0.85[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs17519881 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs2046928 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2404834 | 1.00[GIH][hapmap] |
| rs41286474 | 0.91[EUR][1000 genomes] |
| rs4423250 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7132073 | 0.91[EUR][1000 genomes] |
| rs73102746 | 0.94[EUR][1000 genomes] |
| rs7971935 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TAGLN3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014