SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506152	1.00[CHB][hapmap]
rs11175766	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11175780	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs11564129	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs11564133	1.00[YRI][hapmap]
rs11564149	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11564150	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11564180	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1491937	1.00[YRI][hapmap]
rs17444089	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs17466080	1.00[CHB][hapmap]
rs17466178	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs17466185	0.84[ASN][1000 genomes]
rs17466486	1.00[CHB][hapmap]
rs17466626	1.00[CHB][hapmap]
rs17483628	1.00[YRI][hapmap]
rs17519881	0.85[CEU][hapmap]
rs2046928	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2404574	1.00[YRI][hapmap]
rs2404834	1.00[CHB][hapmap]
rs4423250	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7136434	1.00[YRI][hapmap]
rs7971935	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)