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rVarBase
SNP Report
Basic Infomation
Name
rs11175629  
dbSNP
Location
chr:12,40612814
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11175139
1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11175663
1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11175766
0.82[YRI][hapmap]
rs11175780
0.81[YRI][hapmap]
rs12296596
0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs12300008
1.00[YRI][hapmap]
rs12307850
0.83[YRI][hapmap]
rs12308447
0.84[YRI][hapmap]
rs12313568
1.00[YRI][hapmap]
rs12314745
1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7132755
1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7135747
0.90[YRI][hapmap];0.96[AFR][1000 genomes]
rs9804954
0.85[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
MUC19
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)