SNP Report
Basic Infomation
| Name | rs12296596 dbSNP |
|---|---|
| Location | chr:12,40590181 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11174688 | 0.83[YRI][hapmap] |
| rs11175139 | 0.83[YRI][hapmap] |
| rs11175629 | 0.83[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs11175659 | 0.85[AFR][1000 genomes] |
| rs11175663 | 0.83[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs12300008 | 0.83[YRI][hapmap] |
| rs12304648 | 0.88[AFR][1000 genomes] |
| rs12307850 | 1.00[ASW][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12308447 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes] |
| rs12313568 | 0.83[YRI][hapmap] |
| rs12314745 | 0.83[YRI][hapmap] |
| rs17489951 | 0.83[AFR][1000 genomes] |
| rs28370644 | 0.83[YRI][hapmap] |
| rs7132755 | 0.83[YRI][hapmap] |
| rs7135556 | 0.88[AFR][1000 genomes] |
| rs7135747 | 1.00[MKK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014