SNP Report
Basic Infomation
| Name | rs10908468 dbSNP |
|---|---|
| Location | chr:1,155467277 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752610 | 1.00[ASW][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264359 | 0.92[LWK][hapmap];1.00[YRI][hapmap] |
| rs12077729 | 1.00[ASN][1000 genomes] |
| rs171167 | 0.84[EUR][1000 genomes] |
| rs17367421 | 1.00[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs17377506 | 0.85[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1962247 | 0.84[EUR][1000 genomes] |
| rs348206 | 0.84[EUR][1000 genomes] |
| rs41264969 | 0.84[EUR][1000 genomes] |
| rs4472748 | 1.00[ASW][hapmap];0.96[YRI][hapmap] |
| rs4933 | 0.84[EUR][1000 genomes] |
| rs4971050 | 1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs4971051 | 1.00[ASW][hapmap];0.96[YRI][hapmap] |
| rs4971075 | 1.00[ASW][hapmap];0.83[LWK][hapmap];0.96[YRI][hapmap] |
| rs4971083 | 0.82[CEU][hapmap] |
| rs4971086 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4971087 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs543854 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs548809 | 0.84[EUR][1000 genomes] |
| rs552778 | 0.84[EUR][1000 genomes] |
| rs61258690 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs621181 | 0.84[EUR][1000 genomes] |
| rs7340058 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs7525057 | 0.84[EUR][1000 genomes] |
| rs7535158 | 0.84[EUR][1000 genomes] |
| rs9426929 | 0.84[EUR][1000 genomes] |
| rs9427223 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CCL17 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014