SNP Report
Basic Infomation
| Name | rs1962247 dbSNP |
|---|---|
| Location | chr:1,155708721 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908468 | 0.84[EUR][1000 genomes] |
| rs1094462 | 0.95[EUR][1000 genomes] |
| rs11803678 | 0.95[EUR][1000 genomes] |
| rs1624846 | 0.95[EUR][1000 genomes] |
| rs16837037 | 0.95[EUR][1000 genomes] |
| rs171167 | 0.95[EUR][1000 genomes] |
| rs17377506 | 0.84[EUR][1000 genomes] |
| rs2477541 | 0.95[EUR][1000 genomes] |
| rs2686255 | 0.95[EUR][1000 genomes] |
| rs348206 | 0.95[EUR][1000 genomes] |
| rs41264969 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4253908 | 0.90[EUR][1000 genomes] |
| rs4933 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4971086 | 0.87[EUR][1000 genomes] |
| rs4971087 | 0.87[EUR][1000 genomes] |
| rs543854 | 0.95[EUR][1000 genomes] |
| rs548809 | 0.95[EUR][1000 genomes] |
| rs552778 | 1.00[EUR][1000 genomes] |
| rs59706606 | 0.95[EUR][1000 genomes] |
| rs59791187 | 0.95[EUR][1000 genomes] |
| rs61258690 | 0.90[EUR][1000 genomes] |
| rs621181 | 1.00[EUR][1000 genomes] |
| rs682020 | 0.95[EUR][1000 genomes] |
| rs708612 | 0.90[EUR][1000 genomes] |
| rs73001021 | 0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7525057 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7535158 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs822018 | 0.95[EUR][1000 genomes] |
| rs822019 | 0.95[EUR][1000 genomes] |
| rs822020 | 0.95[EUR][1000 genomes] |
| rs822022 | 0.95[EUR][1000 genomes] |
| rs822026 | 0.90[EUR][1000 genomes] |
| rs9426929 | 1.00[EUR][1000 genomes] |
| rs9427223 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DAP3 | Proximal transcriptional regulation |
| MSTO2P | RNA binding protein mediated regulation |
| MSTO1 | RNA binding protein mediated regulation |
| DAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014