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rVarBase
SNP Report
Basic Infomation
Name
rs17367421  
dbSNP
Location
chr:1,155287241
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10752610
1.00[ASN][1000 genomes]
rs10908468
1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17377506
1.00[ASN][1000 genomes]
rs4971050
1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4971071
0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4971083
0.82[CEU][hapmap]
rs4971086
1.00[ASN][1000 genomes]
rs4971087
1.00[ASN][1000 genomes]
rs7340058
1.00[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
FDPS
Proximal transcriptional regulation
RUSC1
Proximal transcriptional regulation
HCN3
Distal transcriptional regulation
CLK2
Distal transcriptional regulation
RUSC1
Distal transcriptional regulation
RUSC1-AS1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)