SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 7)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752610	1.00[ASW][hapmap];0.80[LWK][hapmap];0.96[YRI][hapmap]
rs10908468	1.00[ASW][hapmap];0.83[LWK][hapmap];0.96[YRI][hapmap]
rs11264359	0.81[LWK][hapmap];0.96[YRI][hapmap]
rs4472748	1.00[ASW][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs4971051	1.00[ASW][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7340058	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs9427215	0.89[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RUSC1	Proximal transcriptional regulation
RUSC1-AS1	Proximal transcriptional regulation
HIST1H2BK	Distal transcriptional regulation
HIST1H2AH	Distal transcriptional regulation
THBS3	Distal transcriptional regulation
MTX1	Distal transcriptional regulation
GBA	Distal transcriptional regulation
FAM189B	Distal transcriptional regulation
CLK2	Distal transcriptional regulation
ASH1L-AS1	Distal transcriptional regulation
ASH1L	Distal transcriptional regulation
MUC1	Distal transcriptional regulation
MIR92B	Distal transcriptional regulation
SCAMP3	Distal transcriptional regulation
HCN3	Distal transcriptional regulation
ENSG00000266402	Distal transcriptional regulation
SNORD104	Distal transcriptional regulation
SNORA76	Distal transcriptional regulation
EFNA3	Distal transcriptional regulation
KRTCAP2	Distal transcriptional regulation
TRIM46	Distal transcriptional regulation
GBAP1	Distal transcriptional regulation
YY1AP1	Distal transcriptional regulation
DAP3	Distal transcriptional regulation
RUSC1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)