SNP Report
Basic Infomation
| Name | rs12077729 dbSNP |
|---|---|
| Location | chr:1,155578588 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752610 | 1.00[ASN][1000 genomes] |
| rs10908468 | 1.00[ASN][1000 genomes] |
| rs12077558 | 0.89[AFR][1000 genomes] |
| rs171167 | 0.84[EUR][1000 genomes] |
| rs17377506 | 1.00[ASN][1000 genomes] |
| rs348206 | 0.84[EUR][1000 genomes] |
| rs4971050 | 1.00[ASN][1000 genomes] |
| rs4971086 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4971087 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs543854 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61258690 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7340058 | 1.00[ASN][1000 genomes] |
| rs7525057 | 0.84[EUR][1000 genomes] |
| rs7535158 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MSTO1 | Proximal transcriptional regulation |
| MSTO2P | Proximal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014