SNP Report
Basic Infomation
| Name | rs10748526 dbSNP |
|---|---|
| Location | chr:10,82273079 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1052631 | 0.89[ASN][1000 genomes] |
| rs10749609 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10785884 | 0.89[CHB][hapmap];0.80[JPT][hapmap] |
| rs10785887 | 0.89[CHB][hapmap] |
| rs10785897 | 0.80[ASN][1000 genomes] |
| rs10881600 | 0.89[CHB][hapmap];0.80[JPT][hapmap] |
| rs1870137 | 0.90[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs1870138 | 0.92[EUR][1000 genomes] |
| rs1878036 | 0.90[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs1902660 | 0.90[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs2138285 | 0.93[CHD][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2292696 | 0.88[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs2343308 | 0.89[CHB][hapmap];0.80[JPT][hapmap] |
| rs41495050 | 0.88[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs56871714 | 0.82[ASN][1000 genomes] |
| rs58429779 | 0.82[ASN][1000 genomes] |
| rs60619720 | 0.81[ASN][1000 genomes] |
| rs6586028 | 0.91[EUR][1000 genomes] |
| rs7080009 | 0.92[EUR][1000 genomes] |
| rs7096909 | 0.84[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs7097656 | 0.90[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs73305195 | 0.89[ASN][1000 genomes] |
| rs7896832 | 0.90[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7900536 | 0.90[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7910643 | 0.91[EUR][1000 genomes] |
| rs7922621 | 0.90[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs873257 | 0.88[ASN][1000 genomes] |
| rs873258 | 0.93[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs873259 | 0.93[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs882682 | 0.89[CHB][hapmap];0.80[JPT][hapmap] |
| rs9633739 | 0.89[CHB][hapmap];0.80[JPT][hapmap] |
| rs9633740 | 0.85[CEU][hapmap];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014