SNP Report
Basic Infomation
| Name | rs7900536 dbSNP |
|---|---|
| Location | chr:10,82253701 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748526 | 0.90[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs10749609 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10788586 | 0.85[CHD][hapmap] |
| rs11185951 | 1.00[JPT][hapmap] |
| rs11185982 | 1.00[JPT][hapmap] |
| rs11186024 | 1.00[JPT][hapmap] |
| rs1340375 | 0.85[CHD][hapmap] |
| rs1340376 | 0.85[CHD][hapmap] |
| rs1340380 | 0.85[CHD][hapmap] |
| rs1417221 | 0.85[CHD][hapmap] |
| rs1572819 | 0.85[CHD][hapmap] |
| rs1870137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1870138 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1870140 | 1.00[ASN][1000 genomes] |
| rs1870142 | 0.85[CHD][hapmap] |
| rs1870148 | 0.84[EUR][1000 genomes] |
| rs1878036 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1890889 | 0.85[CHD][hapmap] |
| rs1902660 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1934692 | 0.85[CHD][hapmap] |
| rs1934694 | 0.85[CHD][hapmap] |
| rs2050824 | 1.00[JPT][hapmap] |
| rs2343306 | 1.00[CHD][hapmap] |
| rs2343551 | 0.90[AMR][1000 genomes] |
| rs4536152 | 0.85[CHD][hapmap] |
| rs4934139 | 0.85[CHD][hapmap] |
| rs4934169 | 0.85[CHD][hapmap] |
| rs6586028 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6586030 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[ASN][1000 genomes] |
| rs7080009 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7082102 | 0.85[CHD][hapmap] |
| rs7082705 | 0.85[CHD][hapmap] |
| rs7096348 | 1.00[JPT][hapmap] |
| rs7096909 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7097656 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7896832 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7910643 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7922621 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9633740 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014