SNP Report
Basic Infomation
| Name | rs1878036 dbSNP |
|---|---|
| Location | chr:10,82280137 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748526 | 0.90[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs10749609 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1870137 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1870138 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1870148 | 1.00[JPT][hapmap];0.85[EUR][1000 genomes] |
| rs1902660 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2343551 | 0.88[AMR][1000 genomes] |
| rs6586028 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7080009 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7096909 | 0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7097656 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7896832 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7900536 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7910643 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7922621 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9633740 | 0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014