SNP Report
Basic Infomation
| Name | rs10785897 dbSNP |
|---|---|
| Location | chr:10,82269238 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748526 | 0.80[ASN][1000 genomes] |
| rs10749609 | 0.90[ASN][1000 genomes] |
| rs10749610 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10785884 | 0.96[ASN][1000 genomes] |
| rs10785887 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10881600 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11203116 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2138285 | 0.82[ASN][1000 genomes] |
| rs2343308 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs41495050 | 0.80[ASN][1000 genomes] |
| rs4933402 | 0.83[ASN][1000 genomes] |
| rs56871714 | 0.80[ASN][1000 genomes] |
| rs58429779 | 0.80[ASN][1000 genomes] |
| rs67413850 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs873257 | 0.85[ASN][1000 genomes] |
| rs873258 | 0.85[ASN][1000 genomes] |
| rs873259 | 0.85[ASN][1000 genomes] |
| rs882682 | 0.99[ASN][1000 genomes] |
| rs9633739 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014