SNP Report
Basic Infomation
| Name | rs873259 dbSNP |
|---|---|
| Location | chr:10,82279927 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1052631 | 0.81[ASN][1000 genomes] |
| rs10748526 | 0.93[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs10749610 | 0.85[ASN][1000 genomes] |
| rs10785884 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10785887 | 0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10785897 | 0.85[ASN][1000 genomes] |
| rs10881600 | 0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2138285 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes] |
| rs2343308 | 0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap] |
| rs67413850 | 0.85[ASN][1000 genomes] |
| rs73305195 | 0.81[ASN][1000 genomes] |
| rs873257 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs873258 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[ASN][1000 genomes] |
| rs882682 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9633739 | 0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014