SNP Report
Basic Infomation
| Name | rs1052631 dbSNP |
|---|---|
| Location | chr:10,82279070 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10748526 | 0.89[ASN][1000 genomes] |
| rs2292696 | 0.87[ASN][1000 genomes] |
| rs41495050 | 0.89[ASN][1000 genomes] |
| rs56871714 | 0.89[ASN][1000 genomes] |
| rs58429779 | 0.89[ASN][1000 genomes] |
| rs60366349 | 0.81[EUR][1000 genomes] |
| rs60619720 | 0.87[ASN][1000 genomes] |
| rs61188968 | 0.82[EUR][1000 genomes] |
| rs73305122 | 0.81[EUR][1000 genomes] |
| rs73305127 | 0.81[EUR][1000 genomes] |
| rs73305130 | 0.81[EUR][1000 genomes] |
| rs73305140 | 0.81[EUR][1000 genomes] |
| rs73305142 | 0.81[EUR][1000 genomes] |
| rs73305144 | 0.81[EUR][1000 genomes] |
| rs73305195 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7906548 | 0.81[EUR][1000 genomes] |
| rs873257 | 0.81[ASN][1000 genomes] |
| rs873258 | 0.81[ASN][1000 genomes] |
| rs873259 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014