SNP Report
Basic Infomation
| Name | rs73305122 dbSNP |
|---|---|
| Location | chr:10,82216308 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1052631 | 0.81[EUR][1000 genomes] |
| rs17105302 | 0.96[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2880601 | 0.85[EUR][1000 genomes] |
| rs58411552 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs60366349 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61188968 | 0.98[EUR][1000 genomes] |
| rs73305111 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73305115 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73305118 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73305120 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73305127 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73305130 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73305140 | 1.00[EUR][1000 genomes] |
| rs73305142 | 1.00[EUR][1000 genomes] |
| rs73305144 | 1.00[EUR][1000 genomes] |
| rs7906548 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| ENSG00000226659 | Distal transcriptional regulation |
| SH2D4B | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014