SNP Report
Basic Infomation
| Name | rs9787608 dbSNP |
|---|---|
| Location | chr:10,93980763 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 75)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509644 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs1057848 | 0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap] |
| rs10786028 | 0.87[TSI][hapmap] |
| rs10882025 | 0.82[ASW][hapmap];0.87[TSI][hapmap] |
| rs10882030 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10882031 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10882037 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10882038 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10882044 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186829 | 0.84[MKK][hapmap];0.87[TSI][hapmap] |
| rs11186838 | 0.82[CEU][hapmap] |
| rs11186839 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186841 | 1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186842 | 0.90[ASN][1000 genomes] |
| rs11186843 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186852 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186856 | 0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs11186859 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186860 | 0.95[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186866 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186867 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186868 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186870 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186875 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11186876 | 0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11186878 | 0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11186879 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11186880 | 0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11186881 | 0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11186884 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186888 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186892 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186894 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186895 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186896 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11186897 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11186898 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11186923 | 0.83[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap] |
| rs11186926 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs12355759 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12358721 | 0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12358765 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12359038 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12571139 | 0.85[LWK][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap] |
| rs1539468 | 0.81[ASW][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap] |
| rs1557178 | 0.85[MKK][hapmap];0.87[TSI][hapmap] |
| rs1571176 | 0.87[TSI][hapmap] |
| rs17107517 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1878424 | 0.87[TSI][hapmap] |
| rs2096227 | 0.87[TSI][hapmap] |
| rs2185834 | 0.87[TSI][hapmap] |
| rs2421831 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28661623 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3781230 | 1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3781231 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4933717 | 0.87[TSI][hapmap] |
| rs56239008 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61875208 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61875210 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61875221 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6583802 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6583805 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7067935 | 1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7071524 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7073862 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7074059 | 0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7084059 | 0.87[TSI][hapmap] |
| rs7085684 | 0.84[MKK][hapmap];0.87[TSI][hapmap] |
| rs7088903 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72807264 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs746842 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs766398 | 0.82[ASW][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap] |
| rs7905301 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7917088 | 0.85[YRI][hapmap] |
| rs932820 | 0.85[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014