SNP Report

Basic Infomation

Name	rs11186856 dbSNP
Location	chr:10,93964017
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 75)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1057848	0.89[CHD][hapmap]
rs1059515	0.81[MKK][hapmap]
rs10786028	0.82[CEU][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs10882023	0.81[CEU][hapmap]
rs10882025	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs10882030	0.96[EUR][1000 genomes]
rs10882031	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs10882037	0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs10882038	0.92[EUR][1000 genomes]
rs10882044	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11186817	0.82[CEU][hapmap]
rs11186829	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs11186838	0.82[CEU][hapmap]
rs11186839	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11186841	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs11186843	0.93[EUR][1000 genomes]
rs11186852	0.85[CEU][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.84[EUR][1000 genomes]
rs11186859	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs11186860	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs11186866	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs11186867	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11186868	0.90[CEU][hapmap];0.90[GIH][hapmap];0.86[MKK][hapmap];0.95[EUR][1000 genomes]
rs11186870	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs11186875	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs11186876	0.95[EUR][1000 genomes]
rs11186878	0.95[EUR][1000 genomes]
rs11186879	1.00[ASW][hapmap];0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs11186880	0.95[EUR][1000 genomes]
rs11186881	0.95[EUR][1000 genomes]
rs11186884	0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs11186888	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs11186892	0.92[EUR][1000 genomes]
rs11186894	0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs11186895	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs11186896	0.93[EUR][1000 genomes]
rs11186897	0.93[EUR][1000 genomes]
rs11186898	0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs11186923	0.88[CHD][hapmap]
rs12355759	0.92[EUR][1000 genomes]
rs12358721	0.95[EUR][1000 genomes]
rs12358765	0.92[EUR][1000 genomes]
rs12359038	0.95[EUR][1000 genomes]
rs12571139	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs1539468	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs1557178	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs1571176	0.82[CEU][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs17107517	0.90[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs1878424	0.82[CEU][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs1935865	0.82[CEU][hapmap]
rs2096227	0.82[CEU][hapmap];0.84[TSI][hapmap]
rs2185834	0.82[CEU][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs2421831	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28661623	0.93[EUR][1000 genomes]
rs3781230	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs3781231	0.93[EUR][1000 genomes]
rs4933717	0.82[CEU][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap]
rs56239008	0.92[EUR][1000 genomes]
rs61875208	0.91[EUR][1000 genomes]
rs61875210	0.83[EUR][1000 genomes]
rs61875221	0.99[EUR][1000 genomes]
rs6583802	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6583805	0.94[EUR][1000 genomes]
rs7067935	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs7071524	0.93[EUR][1000 genomes]
rs7073862	0.87[EUR][1000 genomes]
rs7074059	0.95[EUR][1000 genomes]
rs7084059	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs7085684	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs7086446	0.82[CEU][hapmap]
rs7088903	1.00[ASW][hapmap];0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs72807264	0.81[EUR][1000 genomes]
rs746842	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs766398	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs7905301	0.91[EUR][1000 genomes]
rs9787608	0.90[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000221042	RNA binding protein mediated regulation
CPEB3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
BTAF1	SCAN
MARCH5	SCAN
CPEB3	SCAN
BLNK	SCAN