SNP Report
Name | rs9548   dbSNP |
---|---|
Location | chr:9,139317823 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10706 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10781497 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs10870069 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs10870070 | 0.83[CEU][hapmap];0.89[JPT][hapmap] |
rs10870076 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs10870137 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10870138 | 0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10870144 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10870147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10870167 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10870182 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs10870184 | 0.88[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs10870188 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10870193 | 0.94[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10870197 | 0.88[CEU][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes] |
rs10870199 | 0.94[CEU][hapmap];0.83[AMR][1000 genomes] |
rs10870203 | 0.88[CEU][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
rs11145904 | 0.84[JPT][hapmap];0.88[ASN][1000 genomes] |
rs11145915 | 0.83[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11145933 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11145939 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11145983 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11146030 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs1127162 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs1128877 | 0.88[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs1131992 | 0.90[ASN][1000 genomes] |
rs11794124 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs12237866 | 0.94[CEU][hapmap] |
rs3812562 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap] |
rs3812577 | 0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
rs3812589 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs3812590 | 0.94[CEU][hapmap];0.89[JPT][hapmap] |
rs3812592 | 0.94[CEU][hapmap] |
rs4295775 | 0.91[ASN][1000 genomes] |
rs4451431 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs4582662 | 0.94[CEU][hapmap] |
rs4604565 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7019026 | 1.00[JPT][hapmap] |
rs7864414 | 0.88[CEU][hapmap];0.89[JPT][hapmap] |
rs7864967 | 0.84[ASN][1000 genomes] |
rs9657743 | 0.94[CEU][hapmap] |
rs9657744 | 0.94[CEU][hapmap] |
Symbol | Regulation type |
---|---|
PMPCA | Proximal transcriptional regulation |
SEC16A | Distal transcriptional regulation |
ENSG00000228401 | Distal transcriptional regulation |
INPP5E | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014