SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10706	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10870134	0.86[AFR][1000 genomes]
rs10870137	0.92[ASN][1000 genomes]
rs10870138	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10870144	0.88[CHB][hapmap];0.92[ASN][1000 genomes]
rs10870147	0.91[ASN][1000 genomes]
rs10870167	0.91[ASN][1000 genomes]
rs10870182	0.80[ASN][1000 genomes]
rs10870184	0.82[ASN][1000 genomes]
rs11145904	0.91[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11145915	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs11145933	0.91[ASN][1000 genomes]
rs11145939	0.91[ASN][1000 genomes]
rs11145983	0.91[ASN][1000 genomes]
rs1128877	0.80[ASN][1000 genomes]
rs1131992	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3812562	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs3812577	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4604565	0.91[ASN][1000 genomes]
rs9548	0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SDCCAG3	Proximal transcriptional regulation
EGFL7	Distal transcriptional regulation
SDCCAG3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)