SNP Report
Name | rs3812562   dbSNP |
---|---|
Location | chr:9,139270975 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10706 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs10870134 | 0.86[AFR][1000 genomes] |
rs10870138 | 0.92[CHB][hapmap];0.85[JPT][hapmap] |
rs10870144 | 0.83[CHB][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap] |
rs11145904 | 0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap] |
rs11145915 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
rs1131992 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes] |
rs3812577 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes] |
rs4295775 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes] |
rs7019026 | 0.82[JPT][hapmap] |
rs9548 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap] |
Symbol | Regulation type |
---|---|
CARD9 | Proximal transcriptional regulation |
EGFL7 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014