SNP Report
Basic Infomation
| Name | rs3812577 dbSNP |
|---|---|
| Location | chr:9,139299637 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10706 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10870134 | 1.00[AFR][1000 genomes] |
| rs10870137 | 0.92[ASN][1000 genomes] |
| rs10870138 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs10870144 | 0.91[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes] |
| rs10870147 | 0.91[ASN][1000 genomes] |
| rs10870167 | 0.91[ASN][1000 genomes] |
| rs10870182 | 0.80[ASN][1000 genomes] |
| rs10870184 | 0.82[ASN][1000 genomes] |
| rs11145904 | 0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11145915 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs11145933 | 0.91[ASN][1000 genomes] |
| rs11145939 | 0.91[ASN][1000 genomes] |
| rs11145983 | 0.91[ASN][1000 genomes] |
| rs1128877 | 0.80[ASN][1000 genomes] |
| rs1131992 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3812562 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs4295775 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4604565 | 0.91[ASN][1000 genomes] |
| rs7019026 | 0.84[JPT][hapmap] |
| rs9548 | 0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SDCCAG3 | Proximal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SDCCAG3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014