SNP Report
Basic Infomation
| Name | rs10870167 dbSNP |
|---|---|
| Location | chr:9,139317067 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10706 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10870137 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10870138 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10870144 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10870147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10870182 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10870184 | 0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10870188 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10870193 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10870197 | 0.81[AMR][1000 genomes] |
| rs10870199 | 0.83[AMR][1000 genomes] |
| rs10870203 | 0.81[ASN][1000 genomes] |
| rs11145904 | 0.88[ASN][1000 genomes] |
| rs11145915 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11145933 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11145939 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11145983 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1128877 | 0.86[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1131992 | 0.90[ASN][1000 genomes] |
| rs11794124 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3812577 | 0.91[ASN][1000 genomes] |
| rs4295775 | 0.91[ASN][1000 genomes] |
| rs4451431 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4604565 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7864967 | 0.84[ASN][1000 genomes] |
| rs9548 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SEC16A | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014