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rVarBase
SNP Report
Basic Infomation
Name
rs7929471  
dbSNP
Location
chr:11,60765553
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10750951
0.82[ASN][1000 genomes]
rs2237996
0.84[CHB][hapmap];0.91[JPT][hapmap]
rs4939481
0.80[AFR][1000 genomes]
rs4939482
0.89[LWK][hapmap];0.88[MKK][hapmap]
rs4939483
0.83[CHB][hapmap];0.90[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
CD6
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
CXCR4
SCAN
ZDHHC5
SCAN
CD6
SCAN
SNORD28
SCAN
MRPL16
SCAN