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rVarBase
SNP Report
Basic Infomation
Name
rs4939481  
dbSNP
Location
chr:11,60762756
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11820144
0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4939482
0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4939488
0.86[ASN][1000 genomes]
rs59258857
0.88[ASN][1000 genomes]
rs61899222
0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61899223
0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7102626
0.88[ASN][1000 genomes]
rs7929471
0.80[AFR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CD6
Distal transcriptional regulation
CD6
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)