SNP Report
Basic Infomation
| Name | rs4939488 dbSNP |
|---|---|
| Location | chr:11,60786474 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050922 | 0.88[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs11820144 | 0.97[ASN][1000 genomes] |
| rs2074229 | 0.80[LWK][hapmap];0.86[YRI][hapmap] |
| rs2074231 | 0.82[AFR][1000 genomes] |
| rs2074232 | 0.84[AFR][1000 genomes] |
| rs4939481 | 0.86[ASN][1000 genomes] |
| rs4939482 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs59258857 | 0.97[ASN][1000 genomes] |
| rs61899222 | 0.97[ASN][1000 genomes] |
| rs61899223 | 0.97[ASN][1000 genomes] |
| rs7102626 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7937064 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7937068 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014