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rVarBase
SNP Report
Basic Infomation
Name
rs4939483  
dbSNP
Location
chr:11,60769717
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2074223
0.80[ASN][1000 genomes]
rs2074224
0.80[ASN][1000 genomes]
rs2074228
1.00[EUR][1000 genomes]
rs2237996
1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237997
0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs2237998
0.92[ASN][1000 genomes]
rs2238000
1.00[EUR][1000 genomes]
rs61899219
0.83[ASN][1000 genomes]
rs7929471
0.83[CHB][hapmap];0.90[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
CD6
Proximal transcriptional regulation
CD6
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)