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rVarBase
SNP Report
Basic Infomation
Name
rs2238000  
dbSNP
Location
chr:11,60780301
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2074228
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2237996
0.82[EUR][1000 genomes]
rs2237998
1.00[AMR][1000 genomes]
rs4939483
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CD6
Proximal transcriptional regulation
CD6
Distal transcriptional regulation
VPS37C
Distal transcriptional regulation
CD6
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)