SNP Report
Basic Infomation
| Name | rs7569084 dbSNP |
|---|---|
| Location | chr:2,65656969 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10153675 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10166100 | 0.97[ASN][1000 genomes] |
| rs10166362 | 0.97[ASN][1000 genomes] |
| rs10184881 | 0.87[ASN][1000 genomes] |
| rs11678543 | 0.80[ASN][1000 genomes] |
| rs12185577 | 0.97[ASN][1000 genomes] |
| rs12185610 | 1.00[ASN][1000 genomes] |
| rs12470883 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs13383320 | 0.97[ASN][1000 genomes] |
| rs13385171 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1437466 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1807337 | 1.00[ASN][1000 genomes] |
| rs1866050 | 0.80[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2028150 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2028151 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2661794 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs2860773 | 0.90[CHB][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4671667 | 0.80[ASN][1000 genomes] |
| rs55792977 | 0.97[ASN][1000 genomes] |
| rs57230522 | 0.99[ASN][1000 genomes] |
| rs62141075 | 0.97[ASN][1000 genomes] |
| rs62141115 | 0.86[ASN][1000 genomes] |
| rs6546151 | 0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6742215 | 0.86[ASN][1000 genomes] |
| rs6752053 | 0.92[ASN][1000 genomes] |
| rs702876 | 0.80[ASN][1000 genomes] |
| rs702878 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs754110 | 0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7557569 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7565437 | 0.97[ASN][1000 genomes] |
| rs7569113 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7569257 | 0.93[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7572922 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7575614 | 0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7576126 | 1.00[ASN][1000 genomes] |
| rs7583469 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7584078 | 0.97[ASN][1000 genomes] |
| rs840965 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs840966 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs840970 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs840973 | 0.82[ASN][1000 genomes] |
| rs840974 | 0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| ENSG00000232693 | Distal transcriptional regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014