SNP Report
Basic Infomation
| Name | rs7584078 dbSNP |
|---|---|
| Location | chr:2,65660978 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10153675 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10166100 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10166362 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10184881 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12185577 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12185610 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12470883 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13383320 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13385171 | 0.97[ASN][1000 genomes] |
| rs1437466 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1807337 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1866050 | 0.82[ASN][1000 genomes] |
| rs2028150 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2028151 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2860773 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs55792977 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57230522 | 0.96[ASN][1000 genomes] |
| rs62141075 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62141115 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6546151 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6742215 | 0.83[ASN][1000 genomes] |
| rs6752053 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs754110 | 0.83[ASN][1000 genomes] |
| rs7557569 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7565437 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7569084 | 0.97[ASN][1000 genomes] |
| rs7569113 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7569257 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7572922 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7575614 | 0.81[ASN][1000 genomes] |
| rs7576126 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7583469 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Proximal transcriptional regulation |
| ENSG00000204929 | Proximal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| SPRED2 | Distal transcriptional regulation |
| ENSG00000232693 | Distal transcriptional regulation |
| ENSG00000251900 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014