SNP Report
Basic Infomation
| Name | rs7576126 dbSNP |
|---|---|
| Location | chr:2,65658369 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10153675 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10166100 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10166362 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10184881 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11678543 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12185577 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12185610 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12470883 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13383320 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13385171 | 1.00[ASN][1000 genomes] |
| rs1437466 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1807337 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1866050 | 0.84[ASN][1000 genomes] |
| rs2028150 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2028151 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2860773 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4671667 | 0.80[ASN][1000 genomes] |
| rs55792977 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57230522 | 0.99[ASN][1000 genomes] |
| rs62141075 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62141115 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6546151 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6742215 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6752053 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs702876 | 0.80[ASN][1000 genomes] |
| rs702878 | 0.80[ASN][1000 genomes] |
| rs754110 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7557569 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7565437 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7569084 | 1.00[ASN][1000 genomes] |
| rs7569113 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7569257 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7572922 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7575614 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7583469 | 0.97[ASN][1000 genomes] |
| rs7584078 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs840965 | 0.80[ASN][1000 genomes] |
| rs840966 | 0.80[ASN][1000 genomes] |
| rs840970 | 0.80[ASN][1000 genomes] |
| rs840973 | 0.82[ASN][1000 genomes] |
| rs840974 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACTR2 | Distal transcriptional regulation |
| SPRED2 | Distal transcriptional regulation |
| ENSG00000232693 | Distal transcriptional regulation |
| ENSG00000251900 | Distal transcriptional regulation |
| TMSB10 | Distal transcriptional regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014