SNP Report

Basic Infomation

Name	rs754110 dbSNP
Location	chr:2,65691760
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10153675	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs10166100	0.83[ASN][1000 genomes]
rs10166362	0.83[ASN][1000 genomes]
rs10184881	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11678543	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12185577	0.83[ASN][1000 genomes]
rs12185610	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12467508	0.80[ASN][1000 genomes]
rs12470883	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs13383320	0.83[ASN][1000 genomes]
rs13385171	0.86[ASN][1000 genomes]
rs1437466	0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1807337	0.86[ASN][1000 genomes]
rs1866050	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2028150	0.90[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2028151	0.90[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2661794	0.83[JPT][hapmap]
rs2860773	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4671667	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55792977	0.83[ASN][1000 genomes]
rs57230522	0.84[ASN][1000 genomes]
rs62141075	0.83[ASN][1000 genomes]
rs62141115	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6546151	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6742215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752053	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702876	0.81[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs702877	0.86[ASN][1000 genomes]
rs702878	0.80[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7557569	0.90[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.83[ASN][1000 genomes]
rs7565437	0.83[ASN][1000 genomes]
rs7569084	0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7569113	0.90[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7569257	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7572922	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7575614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7576126	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7583469	0.90[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7584078	0.83[ASN][1000 genomes]
rs840965	0.80[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs840966	0.80[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs840970	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs840973	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs840974	0.80[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs840976	0.84[CEU][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPRED2	Distal transcriptional regulation
ENSG00000204929	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)