SNP Report
Basic Infomation
| Name | rs2661794 dbSNP |
|---|---|
| Location | chr:2,65639543 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10153675 | 1.00[JPT][hapmap] |
| rs10186240 | 0.83[CEU][hapmap] |
| rs1039764 | 0.85[CEU][hapmap] |
| rs11689314 | 0.81[CEU][hapmap] |
| rs1194849 | 0.92[CEU][hapmap] |
| rs12470883 | 1.00[JPT][hapmap] |
| rs1437466 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs174847 | 0.87[CEU][hapmap] |
| rs1866050 | 0.83[JPT][hapmap] |
| rs1876518 | 0.92[CEU][hapmap] |
| rs198478 | 0.85[CEU][hapmap] |
| rs2028150 | 1.00[JPT][hapmap] |
| rs2028151 | 1.00[JPT][hapmap] |
| rs2661796 | 0.92[CEU][hapmap] |
| rs2661797 | 0.85[CEU][hapmap] |
| rs2661798 | 0.87[CEU][hapmap] |
| rs268122 | 0.87[CEU][hapmap] |
| rs268131 | 0.92[CEU][hapmap] |
| rs268132 | 0.92[CEU][hapmap] |
| rs268136 | 0.85[CEU][hapmap] |
| rs268138 | 0.87[CEU][hapmap] |
| rs268139 | 0.85[CEU][hapmap] |
| rs2860773 | 0.92[JPT][hapmap] |
| rs4303705 | 0.88[CEU][hapmap] |
| rs6546151 | 0.83[JPT][hapmap] |
| rs6738087 | 0.83[CEU][hapmap] |
| rs702878 | 0.83[JPT][hapmap] |
| rs754110 | 0.83[JPT][hapmap] |
| rs7557569 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs7569084 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs7569113 | 1.00[JPT][hapmap] |
| rs7572922 | 1.00[JPT][hapmap] |
| rs7575614 | 0.83[JPT][hapmap] |
| rs7583469 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs840965 | 0.83[JPT][hapmap] |
| rs840966 | 0.82[JPT][hapmap] |
| rs840970 | 0.83[JPT][hapmap] |
| rs840974 | 0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPRED2 | Distal transcriptional regulation |
| SPRED2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014