SNP Report
Basic Infomation
| Name | rs7359118 dbSNP |
|---|---|
| Location | chr:14,68879091 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10131303 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs10133531 | 0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs10144394 | 1.00[JPT][hapmap] |
| rs10145082 | 1.00[JPT][hapmap] |
| rs10145446 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs10149278 | 1.00[JPT][hapmap] |
| rs10151245 | 1.00[JPT][hapmap] |
| rs11626015 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs1570107 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs17105229 | 1.00[MEX][hapmap] |
| rs17105243 | 1.00[MEX][hapmap] |
| rs17105494 | 0.85[CHB][hapmap] |
| rs17105501 | 1.00[CHB][hapmap];1.00[TSI][hapmap] |
| rs17105545 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17105601 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17105664 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs17105879 | 1.00[MEX][hapmap] |
| rs2525502 | 1.00[MEX][hapmap] |
| rs2525518 | 1.00[MEX][hapmap] |
| rs2842324 | 1.00[MEX][hapmap] |
| rs2842336 | 1.00[MEX][hapmap] |
| rs2842337 | 1.00[MEX][hapmap] |
| rs3784127 | 1.00[JPT][hapmap] |
| rs7149619 | 1.00[CHB][hapmap] |
| rs7158636 | 1.00[MEX][hapmap] |
| rs749350 | 1.00[CHB][hapmap] |
| rs749352 | 1.00[CHB][hapmap] |
| rs8005466 | 1.00[MEX][hapmap] |
| rs9323509 | 0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ICAM4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014