SNP Report
Basic Infomation
| Name | rs17105664 dbSNP |
|---|---|
| Location | chr:14,68926193 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10129349 | 1.00[MEX][hapmap] |
| rs10130623 | 0.84[ASN][1000 genomes] |
| rs10131303 | 0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10133531 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes] |
| rs10142381 | 0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10144394 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10145082 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes] |
| rs10145446 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs10149278 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10151245 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11622203 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11625077 | 0.88[ASN][1000 genomes] |
| rs11626013 | 0.88[ASN][1000 genomes] |
| rs11626015 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11846851 | 0.88[ASN][1000 genomes] |
| rs11850581 | 1.00[CEU][hapmap] |
| rs12323677 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1570107 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs17105494 | 1.00[GIH][hapmap] |
| rs17105501 | 1.00[GIH][hapmap] |
| rs17105545 | 0.85[CHD][hapmap];1.00[GIH][hapmap] |
| rs17105573 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17105601 | 0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs28376370 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28655994 | 0.88[ASN][1000 genomes] |
| rs3784127 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60145217 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7142184 | 0.88[ASN][1000 genomes] |
| rs7359118 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| ENSG00000259038 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014