SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10131303	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10133531	0.84[ASW][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10144394	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10145082	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10145446	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs10149278	1.00[JPT][hapmap]
rs10151245	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11626015	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1570107	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17105229	1.00[MEX][hapmap]
rs17105243	1.00[MEX][hapmap]
rs17105494	1.00[GIH][hapmap]
rs17105501	1.00[GIH][hapmap]
rs17105545	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs17105664	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17105879	1.00[MEX][hapmap]
rs2525502	1.00[MEX][hapmap]
rs2525518	1.00[MEX][hapmap]
rs2842324	1.00[MEX][hapmap]
rs2842336	1.00[MEX][hapmap]
rs2842337	1.00[MEX][hapmap]
rs3784127	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7158636	1.00[MEX][hapmap]
rs73276276	0.88[ASN][1000 genomes]
rs7359118	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8005466	1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
RNU5E-1	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)