SNP Report
Basic Infomation
| Name | rs17105494 dbSNP |
|---|---|
| Location | chr:14,68842630 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10131303 | 1.00[GIH][hapmap] |
| rs10145446 | 1.00[GIH][hapmap] |
| rs11626015 | 1.00[GIH][hapmap] |
| rs1570107 | 1.00[GIH][hapmap] |
| rs17105501 | 0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs17105545 | 0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs17105601 | 1.00[GIH][hapmap] |
| rs17105664 | 1.00[GIH][hapmap] |
| rs7149619 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7359118 | 0.85[CHB][hapmap] |
| rs749350 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs749352 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs8009813 | 0.81[CEU][hapmap] |
| rs8010233 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000243546 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014