SNP Report
Basic Infomation
| Name | rs17105243 dbSNP |
|---|---|
| Location | chr:14,68710068 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17105191 | 0.81[AFR][1000 genomes] |
| rs17105200 | 0.81[AFR][1000 genomes] |
| rs17105229 | 0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17105239 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17105244 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17105601 | 1.00[MEX][hapmap] |
| rs4584756 | 0.86[AFR][1000 genomes] |
| rs7145107 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7145443 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7152570 | 0.87[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap] |
| rs7156336 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7160333 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7161572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7359118 | 1.00[MEX][hapmap] |
| rs8012217 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8013323 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014