SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12596260	0.88[CEU][hapmap]
rs12599908	0.83[CEU][hapmap]
rs12928454	0.84[ASN][1000 genomes]
rs1541700	0.89[ASN][1000 genomes]
rs1541701	0.89[ASN][1000 genomes]
rs1559393	0.82[CHB][hapmap]
rs1646025	0.83[CEU][hapmap]
rs1646026	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1690500	0.83[CEU][hapmap]
rs1794019	0.83[CEU][hapmap]
rs1794022	0.83[CEU][hapmap]
rs181694	0.83[CEU][hapmap]
rs1968268	0.84[ASN][1000 genomes]
rs2032931	0.89[ASN][1000 genomes]
rs2032933	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs243315	0.83[CEU][hapmap]
rs2867936	0.88[CEU][hapmap]
rs2867937	0.89[CEU][hapmap]
rs36069022	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs423674	0.83[CEU][hapmap]
rs441349	0.83[CEU][hapmap]
rs4558437	0.80[EUR][1000 genomes]
rs4781072	0.83[EUR][1000 genomes]
rs497184	0.81[CEU][hapmap]
rs529866	0.83[CEU][hapmap]
rs62025679	0.89[EUR][1000 genomes]
rs62025680	0.89[EUR][1000 genomes]
rs6498186	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7184969	0.89[CEU][hapmap]
rs7188861	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189989	0.86[ASN][1000 genomes]
rs7197188	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8061370	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs889648	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOCS1	Distal transcriptional regulation
ENSG00000263080	Distal transcriptional regulation
RMI2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)