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rVarBase
SNP Report
Basic Infomation
Name
rs6498186  
dbSNP
Location
chr:16,11457527
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs36069022
0.87[EUR][1000 genomes]
rs4558437
0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4781072
0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62025679
0.81[EUR][1000 genomes]
rs62025680
0.81[EUR][1000 genomes]
rs7188861
0.84[EUR][1000 genomes]
rs731774
0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8061370
0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs889648
0.88[EUR][1000 genomes]
rs9938869
0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SOCS1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)