SNP Report
Basic Infomation
| Name | rs889648 dbSNP |
|---|---|
| Location | chr:16,11455816 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12928454 | 0.92[ASN][1000 genomes] |
| rs1541700 | 0.97[ASN][1000 genomes] |
| rs1541701 | 0.97[ASN][1000 genomes] |
| rs1968268 | 0.92[ASN][1000 genomes] |
| rs2032931 | 0.97[ASN][1000 genomes] |
| rs2032933 | 0.92[ASN][1000 genomes] |
| rs36069022 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4558437 | 0.81[EUR][1000 genomes] |
| rs4781072 | 0.84[EUR][1000 genomes] |
| rs62025679 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62025680 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6498186 | 0.88[EUR][1000 genomes] |
| rs7188861 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7189989 | 0.94[ASN][1000 genomes] |
| rs7197188 | 0.92[ASN][1000 genomes] |
| rs731774 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8061370 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOCS1 | Distal transcriptional regulation |
| ENSG00000263080 | Distal transcriptional regulation |
| RMI2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014