SNP Report
Basic Infomation
| Name | rs1541701 dbSNP |
|---|---|
| Location | chr:16,11445640 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12917839 | 0.85[AMR][1000 genomes] |
| rs12922090 | 0.85[AMR][1000 genomes] |
| rs12922409 | 0.85[AMR][1000 genomes] |
| rs12928454 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12928968 | 0.88[AMR][1000 genomes] |
| rs12935137 | 0.88[AMR][1000 genomes] |
| rs1541700 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1968268 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2032928 | 0.81[AFR][1000 genomes] |
| rs2032929 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2032930 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2032931 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2032933 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34947566 | 0.85[AMR][1000 genomes] |
| rs66718203 | 0.82[AMR][1000 genomes] |
| rs7188861 | 0.89[ASN][1000 genomes] |
| rs7189989 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7197188 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs731774 | 0.89[ASN][1000 genomes] |
| rs889648 | 0.97[ASN][1000 genomes] |
| rs9922790 | 0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000262703 | Proximal transcriptional regulation |
| SOCS1 | Distal transcriptional regulation |
| ENSG00000238774 | Distal transcriptional regulation |
| ENSG00000262703 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014