SNP Report
Basic Infomation
| Name | rs73108566 dbSNP |
|---|---|
| Location | chr:12,49080698 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168659 | 0.84[AMR][1000 genomes] |
| rs11168680 | 0.89[AMR][1000 genomes] |
| rs11168690 | 0.80[AMR][1000 genomes] |
| rs11168691 | 0.80[AMR][1000 genomes] |
| rs11168692 | 0.80[AMR][1000 genomes] |
| rs11832160 | 0.81[AMR][1000 genomes] |
| rs1895994 | 0.82[AMR][1000 genomes] |
| rs2409084 | 0.84[AMR][1000 genomes] |
| rs3013 | 0.89[AMR][1000 genomes] |
| rs4132370 | 0.89[AMR][1000 genomes] |
| rs61942011 | 0.87[AMR][1000 genomes] |
| rs61942012 | 0.84[AMR][1000 genomes] |
| rs61942018 | 0.84[AMR][1000 genomes] |
| rs61942047 | 0.84[AMR][1000 genomes] |
| rs61942048 | 0.84[AMR][1000 genomes] |
| rs61942049 | 0.84[AMR][1000 genomes] |
| rs61942051 | 0.89[AMR][1000 genomes] |
| rs61942052 | 0.91[AMR][1000 genomes] |
| rs61942053 | 0.91[AMR][1000 genomes] |
| rs7295027 | 0.89[AMR][1000 genomes] |
| rs7295138 | 0.84[AMR][1000 genomes] |
| rs7303113 | 0.81[AMR][1000 genomes] |
| rs7979508 | 0.84[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KANSL2 | Proximal transcriptional regulation |
| CCNT1 | Distal transcriptional regulation |
| KANSL2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014